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Round 1
| Pick | Club | Player's Name | Position | School/Previous Club |
| 1 |  |
Omar Salgado* | F | US U-20 National Team |
| 2 |  |
Darlington Nagbe* | M | University of Akron |
| 3 |  |
Perry Kitchen* | M | University of Akron/US U-20s |
| 4 |  |
Zarek Valentin* | D | University of Akron/US U-20s |
| 5 |  |
Zac MacMath* | GK | University of Maryland/US U-20s |
| 6 |  |
AJ Soares | D | University of California |
| 7 |  |
Kofi Sarkodie* | D | University of Akron |
| 8 |
(from TOR) |
Michael Nanchoff* | M | University of Akron |
| 9 |  |
Jalil Anibaba | D | University of North Carolina |
| 10 |  |
CJ Sapong | F | James Madison University |
| 11 |
(from SEA1, POR2) |
Will Bruin* | F | Indiana University |
| 12 |  |
Rich Balchan | D | Indiana University |
| 13 |  |
Corey Hertzog* | F | Penn State University |
| 14 |
(from RSL3) |
Victor Estupinan | F | LDU Quito (Ecuador) |
| 15 |
(from SJ 4) |
Justin Meram | F | University of Michigan |
| 16 |  |
Paolo Cardozo | M | Quilmes (Argentina) |
| 17 |  |
Bobby Warshaw | D | Stanford University |
| 18 |  |
Eddie Ababio | D | University of North Carolina |
Rounds 2 & 3 after the break....
Round 2
| Pick | Club | Player's Name | Position | School/Previous Club |
| 19 | |
Jeb Brovsky | M | University of Notre Dame |
| 20 |
 (from POR1) |
Michael Tetteh* | M | UCSB |
| 21 |
(from DC) |
Juan Leone Cruz | M | Southern Methodist |
| 22 |
(from RSL, CHV) |
Chris Taylor | D | University of Tulsa |
| 23 | |
Michael Farfan | M | University of North Carolina |
| 24 | |
Stephen McCarthy | M | University of North Carolina |
| 25 |
(from HOU) |
John Rooney | M | Macclesfield Town (England) |
| 26 |  |
Demitrius Omphroy | D | University of California |
| 27 | |
Servando Carrasco | M | University of California |
| 28 |
(from PHI, KC) |
Cole Grossman | M | Duke University |
| 29 | |
Bryan Meredith | GK | Monmouth University |
| 30 |
(from CLB) |
Tyler Lassiter | D | North Carolina State University |
| 31 |
(from NY) |
Chris Korb | D | University of Akron |
| 32 |
(from RSL) |
J.T. Murray | D | University of Louisville |
| 33 |  |
Anthony Ampaipitakwong | M | University of Akron |
| 34 | |
Hector Jimenez | M | University of California |
| 35 | |
Charlie Campbell | M/F | University of Louisville |
| 36 | |
Colin Givens | D | Michigan State University |
Round 3
| Pick | Club | Player's Name | Position | School/Previous Club |
| 37 | |
Bilal Duckett | D | University Notre Dame |
| 38 |
(from POR) |
Billy Cortes | M | University of Maryland |
| 39 |
(from DC) |
Steven Perry | F | University of Notre Dame |
| 40 | |
Jon Okafor | M | Brown University |
| 41 | |
Levi Houapeu | F | University of Maryland, Baltimore County |
| 42 | |
Ryan Kinne | M/F | Monmouth University |
| 43 |
(from HOU) |
Matt Gold | D | The Ohio State University |
| 44 |
(from COL, TOR) |
Junior Burgos | M | Cal-Poly, San Luis Obispo |
| 45 | |
Jason Herrick | F | University of Maryland |
| 46 | |
Konrad Warzycha | M | The Ohio State University |
| 47 | |
Alex Caskey | M | Davidson College |
| 48 | |
Bernardo Anor | M | University of South Florida |
| 49 |
(from NY, CHI5) |
Joao Plata | M | LDU Quito |
| 50 |
(from RSL, LA, RSL, LA6) |
Joe Willis | GK | University of Denver |
| 51 |
(from SJ) |
Davis Paul | F | University of California |
| 52 |
 (from LA) |
Jarad van Schaik | M | University of Portland |
| 53 | |
Scott Gordon | D | Lynn University |
| 54 |
(from COL) |
Alan Koger | F | College of William & Mary |