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First Round
| Pick | Club | Player | Note |
| 1 |  |
Evan James (UNC Charlotte) |
Position: MF |
| 2 |  |
Gienir García (Cruz Azul) |
Position: D |
| 3 |  |
Dwayne Smith (Bethel Univ.) |
Position: MF |
| 4 |  |
Michael Green (New Mexico) |
Position: MF |
| 5 |
 1
|
R.J. Allen (Monmouth) |
Position: D |
| 6 |
 2
|
Andy Rose (UCLA) |
Position: MF |
| 7 |
 3
|
Brian Ownby (Virginia) |
Position: FW |
| 8 |  |
Ryan Kowaluk (Univ. of Portland) |
Position: MF |
| 9 |  |
Evans Frimpong (Delaware) |
Position: FW |
| 10 |  |
Kirk Urso (UNC) |
Position: MF |
| 11 |  |
Alex Lee (Maryland) |
Position: D |
| 12 |
4
|
Karo Okiomah (High Point Univ.) |
Position: FW |
| 13 |  |
Tom Brandt (Penn) |
Position: D |
| 14 |
5
|
Nick Blake (UConn) |
Position: D |
| 15 |
6
|
Carl Woszczynski (UAB) |
Position: GK |
| 16 |  |
Shawn Singh (UCLA) |
Position: D |
| 17 | |
Emiliano Bonfigli (Manta FC) |
Position: FW |
| 18 | |
Eder Arreola (UCLA) |
Position: MF |
| 19 |  |
Bryan Gaul (Bradley) |
Position: FW |
Second Round
| Pick | Club | Player | Note |
| 20 | |
Aaron Schoenfeld (East Tennessee St.) |
Position: FW |
| 21 | |
Greg Klazura (Notre Dame) |
Position: D/MF |
| 22 | |
Alec Purdie (Indiana) |
Position: MF |
| 23 | |
Mykel Bates (Santa Clara) |
Position: D |
| 24 | |
Brian Rowe (UCLA) |
Position: GK |
| 25 |  |
Cesar Diaz Pizarro (UC Riverside) |
Position: FW |
| 26 |  |
Lance Rozeboom (New Mexico) |
Position: MF |
| 27 | |
Miguel Ibarra (UC Irvine) |
Position: MF |
| 28 |
7
|
Daniel Steres (San Diego St.) |
Position: D |
| 29 | |
Jamie Finch (Washington) |
Position: D |
| 30 |
8
|
Fabian Kling (Fort Lewis) |
Position: D |
| 31 |  |
Mike Volk (Virginia) |
Position: D |
| 32 | |
Krystian Witkowski (Marist) |
Position: FW |
| 33 |
 9
|
Tim Pontius (UC Santa Barbara) |
Position: D |
| 34 | |
Jason Banton (Leicester City) |
Position: FW |
| 35 | |
Pablo Punyed (St. John’s) |
Position: MF |
| 36 | |
Oliver Kupe (Northwestern) |
Position: FW |
| 37 |
10
|
Kevin Venegas (Cal State Fullerton) |
Position: D |
| 38 | |
Rafael Garcia (Cal State Northridge) |
Position: MF |
Third Round
| Pick | Club | Player | Note |
| 39 | |
Steven Miller (Colgate) |
Position: FW |
| 40 | |
Andrew Fontein (UC Irvine) |
Position: GK |
| 41 | |
Kevin Garcia (Villanova) |
Position: D |
| 42 | |
Arthur Ivo (SMU) |
Position: MF |
| 43 |
11
|
Stefan Antonijevic (Valparaiso) |
Position: D |
| 44 | |
David Tiemstra (Ohio State) |
Position: D |
| 45 | |
Charles Rodriguez (UNC Charlotte) |
Position: D |
| 46 | |
Doug Herrick (St. Mary’s) |
Position: GK |
| 47 | |
Tony Walls (UW-Green Bay) |
Position: MF |
| 48 | |
Darren Amoo (Liberty) |
Position: FW |
| 49 | |
Walter Hines (St. John’s) |
Position: FW |
| 50 | |
Christian Barreiro (Penn) |
Position: MF |
| 51 | |
Antoine Hoppenot (Princeton) |
Position: FW |
| 52 |  |
Kohei Yamada (TheSpa Kusatsu, Japan) |
Position: MF |
| 53 | |
Abdul Aman (Washington) |
Position: FW |
| 54 | |
Kyle Miller (Rockhurst) |
Position: MF |
| 55 | |
Benjamín Ubierna (San Martín, Peru) |
Position: MF |
| 56 | |
Philip Aseweh (Liberty) |
Position: FW |
| 57 | |
Yuri Gorentzvaig (SC Corinthians, Brazil) |
Position: FW |
Fourth Round
| Pick | Club | Player | Note |
| 58 | |
Carl Haworth (Niagara) |
Position: FW |
| 59 | |
Mark Fetrow (Penn State) |
Position: D |
| 60 | |
Mike Roach (St. Louis) |
Position: FW |
| 61 | |
Michael Mazzullo (Columbia) |
Position: MF |
| 62 |
12
|
Steven Posa (San Diego) |
Position: FW |
| 63 | |
James Kiffe (UC Santa Barbara) |
Position: D |
| 64 | |
Matt Kuhn (Drake) |
Position: MF |
| 65 | |
Logan McDaniel (Loyola) |
Position: MF |
| 66 | |
Justin Chavez (Tulsa) |
Position: D |
| 67 | |
Andrew Bulls (UMBC) |
Position: FW |
| 68 | |
Ian Kalis (SMU) |
Position: D |
| 69 | |
Nate Polak (Hastings College) |
Position: MF |
| 70 | |
Brandon Zimmerman (Santa Clara) |
Position: MF |
| 71 | |
Joel Helmick (Longwood Univ.) |
Position: GK |
| 72 | |
Wes Feighner (Cal Poly) |
Position: D |
| 73 |
13
|
Tyler Krumpe (Loyola) |
Position: D |
| 74 | |
PASSED |
Position: NA |
| 75 | |
Daniel Roberts (UNC Wilmington) |
Position: MF |
| 76 | |
Justin Davies (San Diego St.) |
Position: D |
1 - from Sporting KC and Chivas USA
2 - from San Jose
3 - from D.C.
4 - from New York
5 - from Colorado
6 - from Seattle
7 - from Chicago
8 - from Dallas
9 - from Dallas and Colorado
10 - from Houston
11 - from Chivas USA
12 - from Chivas USA
13 - from Sporting